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The bug is still present and continues to manifest itself in various ways. In addition to position desync problem there is a failure to properly compare problem. If current comparison position is less than 0x20000 from EOF, then instead of desyncing HxD will declare "No further differences foun...

Sorry for the late response. I totally missed one thing, though, and only now that you couldn't manage to reproduce realized it is important - my keyboard key repeat rate is cranked to its maximum setting. Without it the wait would be proportionately longer. Can you change that and try again? The fi...

How to reproduce:
1. Open any two different files in HxD 2.5.0.0 x64.
2. Ctrl-K to compare.
3. Press and hold F6 for some time, might need up to a minute or so.
4. Notice that file positions have diverged by 0x20000-1.